Document Type




Format of Original

5 p.

Publication Date



BioMed Central

Source Publication

BMC Medical Genomics

Source ISSN


Original Item ID

doi: 10.1186/1755-8794-3-11


Background: Genomic copy number alterations are widely associated with a broad range of human tumors and offer the potential to be used as a diagnostic tool. Especially in the emerging era of personalized medicine medical informatics tools that allow the fast visualization and analysis of genomic alterations of a patient's genomic profile for diagnostic and potential treatment purposes increasingly gain importance. Results: We developed CNAReporter, a software tool that allows users to visualize SNP-specific data obtained from Affymetrix arrays and generate PDF-reports as output. We combined standard algorithms for the analysis of chromosomal alterations, utilizing the widely applied GenePattern framework. As an example, we show genome analyses of two patients with distinctly different CNA profiles using the tool. Conclusions: Glioma subtypes, characterized by different genomic alterations, are often treated differently but can be difficult to differentiate pathologically. CNAReporter offers a user-friendly way to visualize and analyse genomic changes of any given tumor genomic profile, thereby leading to an accurate diagnosis and patient-specific treatment.


Published version. BMC Medical Genomics, Vol. 3 (2010): 11-15. Permalink. © 2010 BioMed Central. Used with permission.

This work is licensed under a Creative Commons Attribution 3.0 Unported License.