Format of Original
Institute of Electrical and Electronics Engineers (IEEE)
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering (BIBE) 2007
Original Item ID
We propose a novel compartmentalized method for the assembly of physical maps from fingerprinted clones. Our assembler exploits the presence of genetic markers at the global level to improve the accuracy of the assembly. Experimental results on the genome of rice and barley demonstrate that the compartmentalized assembler produces significantly more accurate maps, and that it can detect and isolate clones that induce chimeric contigs.
Bozdag, Serdar; Close, Timothy J.; and Lonardi, Stefano, "A Compartmentalized Approach to the Assembly of Physical Maps [Conference Proceedings]" (2007). Mathematics, Statistics and Computer Science Faculty Research and Publications. 82.
Accepted version. Published as part of the proceedings of the conference, Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering (BIBE), 2007: 218-225. DOI. © 2007 Institute of Electrical and Electronics Engineers (IEEE). Used with permission.
Serdar Bozdag was associated with Department of Computer Science and Engineering, University of California at time of publication.