A Compartmentalized Approach to the Assembly of Physical Maps [Conference Proceedings]

Authors

Serdar Bozdag, Marquette UniversityFollow
Timothy J. Close, University of California - RiversideFollow
Stefano Lonardi, University of California - RiversideFollow

Document Type

Conference Proceeding

Language

eng

Format of Original

8 p.

Publication Date

10-2007

Publisher

Institute of Electrical and Electronics Engineers (IEEE)

Source Publication

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering (BIBE) 2007

Source ISSN

1424415098

Original Item ID

doi: 10.1109/BIBE.2007.4375568

Abstract

We propose a novel compartmentalized method for the assembly of physical maps from fingerprinted clones. Our assembler exploits the presence of genetic markers at the global level to improve the accuracy of the assembly. Experimental results on the genome of rice and barley demonstrate that the compartmentalized assembler produces significantly more accurate maps, and that it can detect and isolate clones that induce chimeric contigs.

Comments

Accepted version. Published as part of the proceedings of the conference, Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering (BIBE), 2007: 218-225. DOI. © 2007 Institute of Electrical and Electronics Engineers (IEEE). Used with permission.

Serdar Bozdag was associated with Department of Computer Science and Engineering, University of California at time of publication.

Recommended Citation

Bozdag, Serdar; Close, Timothy J.; and Lonardi, Stefano, "A Compartmentalized Approach to the Assembly of Physical Maps [Conference Proceedings]" (2007). Mathematics, Statistics and Computer Science Faculty Research and Publications. 82.
https://epublications.marquette.edu/mscs_fac/82