A Bayesian Approach to Grappa Parallel Fmri Image Reconstruction Increases Snr and Power of Task Detection

Document Type

Article

Publication Date

6-2025

Publisher

Institute of Mathematical Statistics

Source Publication

Annals of Applied Statistics

Source ISSN

1932-6157

Original Item ID

DOI: 10.1214/24-aoas1962

Abstract

In fMRI, capturing brain activation during a task is dependent on how quickly k-space arrays are obtained. Acquiring full k-space arrays, which are reconstructed into images using the inverse Fourier transform (IFT), that make up volume images can take a considerable amount of scan time. Undersampling k-space reduces the acquisition time but results in aliased, or “folded,” images. GeneRalized Autocalibrating Partial Parallel Acquisition (GRAPPA) is a parallel imaging technique that yields full images from subsampled arrays of k-space. GRAPPA uses localized interpolation weights, which are estimated prescan and fixed over time, to fill in the missing spatial frequencies of the subsampled k-space. Here we propose a Bayesian approach to GRAPPA (BGRAPPA) where prior distributions for the unacquired spatial frequencies, localized interpolation weights, and k-space measurement uncertainty are assessed from the a priori calibration k-space arrays. The prior information is utilized to estimate the missing spatial frequency values from the posterior distribution and reconstruct into full field-of-view images. Our BGRAPPA technique successfully reconstructed both a simulated and experimental time series resulting in reduced noise leading to an increased signal-to-noise ratio (SNR) and stronger power of task detection.

Comments

Annals of Applied Statistics, Vol. 19, No. 2 (June 2025): 1473-1493. DOI.

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